Yingyuan Xie

PhD Candidate
Bioinformatics, Sun Yat-sen University
B.S., Biotechnology, Sun Yat-sen University

E-mail: 1184845710@qq.com

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Research and Scholarly Interests

Epigenetics; Synthetic biology; Bioinformatics.

Publications

Authors from the Luo Lab are marked with ^, first authors marked with #, and corresponding authors marked with *.

Zhang, Y.#^, Zhang, Z. Y.#^, Chen, H. X.#^, Liu, C., Liu, B. D.^, Lan, Y. L.^, Xie, Y. Y.^, Chen, T.^, Chen, S., Feng, G., Zhang, Z.^, Li, W., Cao, N., Wang, X. J., Luo, G. Z.*^(2025). Sequence and parent-of-origin dependent m6A contribute to allele-specific gene expression. The EMBO Journal, Online ahead of print.
PMID: 40461640 DOI: 10.1038/s44318-025-00476-3

Xie, Y. Y.#^, Zhong, Z. D.#^, Chen, H. X.#^, Ren, Z. H.^, Qiu, Y. T.^, Lan, Y. L.^, Wu, F.^, Kong, J. W.^, Luo, R. J.^, Zhang, D., Liu, B. D.^, Shu, Y.^, Yin, F., Wu, J., Li, Z. G., Zhang, Z.*^, Luo, G. Z.*^ (2025). Single-molecule direct RNA sequencing reveals the shaping of epitranscriptome across multiple species. Nature Communications, 16, 5119.
PMID: 40456740 DOI: 10.1038/s41467-025-60447-4

Zhong, Z. D.#^, Xie, Y. Y.#^, Chen, H. X.^, Lan, Y. L.^, Liu, X. H.^, Ji, J. Y.^, Wu, F.^, Jin, L., Chen, J., Mak, D. W., Zhang, Z.*^, Luo, G. Z.*^(2023). Systematic comparison of tools used for m6A mapping from nanopore direct RNA sequencing. Nature Communications, 14(1): 1906.
PMID: 37019930 DOI: 10.1038/s41467-023-37596-5

Liu, J.#, Zuo, H.#, Wang, Z.#, Wang, W., Qian, X., Xie, Y.^, Peng, D., Xie, Y., Hong, L., You, W., Lou, H., Luo, G.^, Ren, J., Shen, B., Zheng, J.*, Wang, H.*, Ju, Z.*(2023). The m6A reader YTHDC1 regulates muscle stem cell proliferation via PI4K-Akt-mTOR signalling. Cell Proliferation, 2023:e13410.
PMID: 36722312 DOI: 10.1111/cpr.13410

Zhang, Z.#^, Chen, T.#^, Chen, H. X.^, Xie, Y. Y.^, Chen, L. Q.^, Zhao, Y. L.^, Liu, B. D.^, Jin, L., Zhang, W., Liu, C., Ma, D. Z.^, Chai, G. S.^, Zhang, Y.^, Zhao, W. S.^, Ng, W. H., Chen, J., Jia, G., Yang, J. and Luo, G. Z.*^ (2021). Systematic calibration of epitranscriptomic maps using a synthetic modification-free RNA library. Nat Methods 18, 1213-1222.
PMID: 34594034 DOI: 10.1038/s41592-021-01280-7